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Abstract
The aim of this study was to determine the prevalence and antibiotic susceptibility profiles of E. coli in African catfish (Clarias gariepinus) in Maiduguri, Borno State, Nigeria. A total of 300 samples were collected from three major fish markets. E. coli was isolated and identified based on morphological and biochemical tests using standard bacteriological procedures. Confirmed E. coli isolates were screened for antibiotic susceptibility using the Kirby–Bauer disc diffusion method. The zones of inhibition were interpreted in accordance with Clinical and Laboratory Standards Institute and European Committee on Antimicrobial Susceptibility Testing protocols. The overall prevalence of E. coli in African catfish was 14.0%. Location-specific prevalences of 12.0%, 14.0%, and 16.0% for the Tashan Bama Market, the Monday Market, and the Custom Market were detected, respectively. Skin samples had a significantly (p = 0.046) lower prevalence compared to intestinal samples. Almost all (97.6%) of the isolates were resistant to at least 2 or more different antibiotic agents, with the highest proportion (38.1%) being resistant to 7 antibiotic agents. Most of the isolates (61.9-92.9%) were resistant to pefloxacin, ampicillin, cefepime, tetracycline, augmentin, streptomycin and nalidixic acid. However, there was notable sensitivity to ofloxacin in several isolates (83.3%). Alarmingly, multidrug resistance was detected in 88.1% of isolates with an average MAR index of 0.62, indicating a high prevalence of antibiotic resistance among isolates recovered. To mitigate public health risk, strict hygienic practices in fish processing and marketing, public education on proper cooking, and the enforcement of rational antibiotic use in aquaculture are strongly recommended.
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References
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- Hassan, M. M., El-Zowalaty M. E., Lundkvist, Ǻ., Jӓrhult, J. D., Khan, N. M. R., Tnazin, A. Z., Badsha, M. R., Khan, S. A. and Ashour, H. M. (2021). Residual antimicrobial agents in food originating from animals. Trends Foo. Sci. Technol., 111: 141-150. DOI: 10.1016/j.tifs.2021.01.075 DOI: https://doi.org/10.1016/j.tifs.2021.01.075
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- Krumperman, P. H. (1983). Multiple antibiotic resistance indexing of Escherichia coli to identify high-risk sources of fecal contamination of foods. Appl. Environment. Microbiol., 46(1): 165–170. https://doi.org/10.1128/aem.46.1.165-170.1983Marijani, E. (2022). Prevalence and antimicrobial resistance of bacteria isolated from marine and freshwater fish in Tanzania. Int. J. Microbiol., 2022(1): 4652326. https://doi.org/10.1155/2022/4652326 DOI: https://doi.org/10.1128/aem.46.1.165-170.1983
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- Saba, A. O., Eyo, V. O., Elegbede, I. O., Fakoya, K. A., Ojewole, A. E., Dawodu, F. O., Adewale, R. A. and Amal, M. N. A. (2024). Sustaining the blue bounty: fish food and nutrition security in Nigeria’s evolving blue economy. AIMS Agri. Foo., 9(2): 500-530. DOI: 10.3934/agrfood.2024029 DOI: https://doi.org/10.3934/agrfood.2024029
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- Yohans, H., Mitiku, B. A. and Tassew, H. (2022). Levels of Escherichia coli as bio-indicator of contamination of fish food and antibiotic resistance pattern along the value chain in Northwest Ethiopia. Vet. Med.: Res. Rep., 13: 299-311. DOI: 10.2147/VMRR.S373738 DOI: https://doi.org/10.2147/VMRR.S373738
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References
Adelowo, O. O., Fagade, O. E., and Agersø, Y. (2014). Antibiotic resistance and resistance genes in Escherichia coli from aquaculture environments in Nigeria. J. Appl. Microbio., 117(6): 1623–1634. https://doi.org/10.1111/jam.12641 DOI: https://doi.org/10.1111/jam.12641
Adenaya, A., Adeniran, A. A., Ugwoke, C. L., Saliu, K., Raji, M. A., Rakshit, A., Ribas-Ribas, M. and Könneke, M. (2025). Environmental risk factors contributing to the spread of antibiotic resistance in West Africa. Microorgan., 13(4): 951. Doi: 10.3390/microorganisms13040951 DOI: https://doi.org/10.3390/microorganisms13040951
Agbabiaka, L. A., Onwuzuruigbo, F. O. and Jimoh, O. A. (2025). Threat to fish food safety in Nigeria: role of antimicrobial usage and resistance in aquaculture. Aqu. Rep., 40: 102643. https://doi.org/10.1016/j.aqrep.2025.102643 DOI: https://doi.org/10.1016/j.aqrep.2025.102643
Akande, A. and Onyedibe, K. I. (2019). First report of enteropathogenic and enteroinvasive Escherichia coli with multiple antibiotic resistance indices from African catfish (Clarias glariepinus) in Nigeria. African J. Clinic. Experiment. Microbiol., 20(2): 95-103. DOI: https://doi.org/10.4314/ajcem.v20i2.3
Akinbowale, O. L., Peng, H. and Barton, M. D. (2006). Antimicrobial resistance in bacteria isolated from aquaculture sources in Australia. J. Appl. Microbiol., 100(5): 1103–1113. https://doi.org/10.1111/j.1365-2672.2006.02812.x DOI: https://doi.org/10.1111/j.1365-2672.2006.02812.x
Akter, M., Abedin, M., Mosharaf, M. P., Islam, M. A. I. and Hassan, M. Z. (2022). Prevalence and distribution of antimicrobial resistance profile of Escherichia coli isolated from various local fish markets in Dhaka city, Bangladesh. J. Bangladesh Acad. Sc., 46(1): 9-18. DOI: 10.3329/jbas.v46i1.60344 DOI: https://doi.org/10.3329/jbas.v46i1.60344
Albuquerque, R. (2013). Escherichia coli in seafood: a brief overview. Adv. Biosci. Biotechnol., 4(3): 450-454. DOI: 10.4236/abb.2013.43A060 DOI: https://doi.org/10.4236/abb.2013.43A060
Alexandre, L. A., de Silva, A. C., Nascimento, F, L, A., de Melo, A. P. Z. and Verruck, S. (2025). Antimicrobial resistance of Escherichia coli isolated from fish and aquaculture water: an emerging concern for consumers. Letters Appl. Microbiol., 78(8): ovaf099. https://doi.org/10.1093/lambio/ovaf099 DOI: https://doi.org/10.1093/lambio/ovaf099
Ali, I. H. A. A., Salman, A. M. A., Abubaker, E. A. A. and Hamad, E. M. (2022). Risk associated with E. coli in marine fish in Port Sudan, Red Sea State, Sudan. European J. Vet. Med., 3(6): 1-6. DOI: 10.24018/ejvetmed.2022.2.6.56 DOI: https://doi.org/10.24018/ejvetmed.2022.3.6.56
Bedane, T. D., Megersa, B., Abunna, F., Waktole, H., Woldemariyam, F. T., Tekle, M., Shimelis, E. and Gutema, F. D. (2024). Occurrence, molecular characterization, and antimicrobial susceptibility of sorbitol non-fermenting Escherichia coli in lake water, fish and humans in central Oromia, Ethiopia. Scient. Rep., 14: 12461. https://doi.org/10.1038/s41598-024-61810-z DOI: https://doi.org/10.1038/s41598-024-61810-z
Bibi, F., Qaisrani, S. N., Ahmad, A. N., Akhtar, M., Khan, B. N. and Ali, Z. (2015). Occurrence of Salmonella in freshwater fishes: a review. J. Anim. Plan. Scie., 25(3): 303-310.
Bradley, B., Byrd, K. A., Atkins, M., Isa, S., Akintola, S. l., Fakoya, K. A., Ene-Obong, H. and Thilsted, S. H. (2020). Fish in food systems in Nigeria: a review. World Fish, Program report: 2020-06. https://hdl.handle.net/20.500.12348/4210
Center for Disease Control (2024). Escherichia coli infection. Available from: https://www.cdc.gov/ecoli/about/index.html. [Last accessed on 14 May 2024].
Cheesbrough, M. (2017). District laboratory practice in tropical countries (2nd ed.). Cambridge University Press, 62.
Cheung, C., Naughton, P. J., Dooley, J. S. G., Corcionivoschi, N. and Brooks, C. (2025). The spread of antimicrobial resistance in the aquatic environment from faecal pollution: a scoping review of a multifaceted issue. Environment. Monit. Assess., 197: 467. https://doi.org/10.1007/s10661-025-13860-7 DOI: https://doi.org/10.1007/s10661-025-13860-7
Chigor, V. N., Umoh, V. J., Smith, S. I., Igbinosa, E. O. and Okoh, A. I. (2010). Multidrug resistance and plasmid patterns of Escherichia coli 0157 and other E. coli isolated from diarrheal stools and surface waters from some selected sources in Zaria. Int. J. Environment. Res. Pub. Heal., 7(10): 3831–3841. DOI: 10.3390/ijerph7103831 DOI: https://doi.org/10.3390/ijerph7103831
CSLI (2024). Performance standards for antimicrobial susceptibility testing. 34th ed. CSLI Supplements M100. Clinical and Laboratory Standards Institute.
Deblias, L., Ahmedo, B. U., Ojeda, A., Mummed, B., Wang, Y., Mekonnen, Y. T., Weldesenbet, Y. D., Hassen, K., Brhhane, M., Mckune, S., Havelaar, A. H., Liang, S. and Rajashekara, G. (2025). Assessing fecal contamination from human and environmental sources using Escherichia coli as an indicator in rural eastern Ethiopian household – a cross-sectional study from the EXCAM project. Front. Pub. Heal., 12: 1484808. Doi: 10.3389/fpubh.2024.1484808 DOI: https://doi.org/10.3389/fpubh.2024.1484808
Dewi, R. R., Hassan, L., Daud, H. M., Matori, M. F., Zakaria, Z., Ahmad, N. I., Aziz, S. A. and Jajere, S. M. (2022). On-farm practices associated with multi-drug-resistant Escherichia coli and Vibrio parahaemolyticus derived from cultured fish. Microorgan., 10(8): 1520. https://doi.org/10.3390/microorganisms10081520 DOI: https://doi.org/10.3390/microorganisms10081520
Ehsan, H. (2025). Antibiotic resistance in developing countries: emerging threats and policy responses. Pub. Heal. Challeng., 4: e70034. https://doi.org/10.1002/puh2.70034 DOI: https://doi.org/10.1002/puh2.70034
El-Badawy, A., Hamza, D., Ahmed, Z. and Sabry, M. A. (2025). Seasonal and environmental drivers of antibiotic resistance and virulence in Escherichia coli from aquaculture and their public health implications. Scient. Rep., 15: 16100. https://doi.org/10.1038/s41598-025-98498-8. DOI: https://doi.org/10.1038/s41598-025-98498-8
Grema, A. H., Geidam, Y. A., Suleiman, A., Gulani, I. A. and Birma, R. B. (2015). Multi-drug-resistant bacteria isolated from fish and fish handlers in Maiduguri, Nigeria. Int. J. Anim. Vet. adv., 7(3): 49-54. DOI: https://doi.org/10.19026/ijava.7.5240
Hassan, M. M., El-Zowalaty M. E., Lundkvist, Ǻ., Jӓrhult, J. D., Khan, N. M. R., Tnazin, A. Z., Badsha, M. R., Khan, S. A. and Ashour, H. M. (2021). Residual antimicrobial agents in food originating from animals. Trends Foo. Sci. Technol., 111: 141-150. DOI: 10.1016/j.tifs.2021.01.075 DOI: https://doi.org/10.1016/j.tifs.2021.01.075
Hatha, A. A. M., Vivekanandhan, A. A., Joice, G. J. and Christol, J. (2005). Antibiotic resistance pattern of motile aeromonads from farm raised freshwater fish. Int. J. Foo. Microbiol., 98(2): 131–134. https://doi.org/10.1016/j.ijfoodmicro.2004.05.017 DOI: https://doi.org/10.1016/j.ijfoodmicro.2004.05.017
Ibrahim, M. A., Ibrahim, S. M. and Abozaid, F. H. (2024). Guidelines of fish supply chain from post harvesting to marketing. Egyptian J. Aqu. Biol. Fish., 28(5): 307-319. DOI: https://doi.org/10.21608/ejabf.2024.378875
Krumperman, P. H. (1983). Multiple antibiotic resistance indexing of Escherichia coli to identify high-risk sources of fecal contamination of foods. Appl. Environment. Microbiol., 46(1): 165–170. https://doi.org/10.1128/aem.46.1.165-170.1983Marijani, E. (2022). Prevalence and antimicrobial resistance of bacteria isolated from marine and freshwater fish in Tanzania. Int. J. Microbiol., 2022(1): 4652326. https://doi.org/10.1155/2022/4652326 DOI: https://doi.org/10.1128/aem.46.1.165-170.1983
Marquis, G. (2022). Microbiological safety and quality of raw, ready-to-eat (RTE) seafood sold in Orange County, California (Master’s thesis, Chapman University).
Ndukwe, N. N. and Ibrahim, H. I. (2024). Antibiotic resistance genes in freshwater environment: sources, fate, ecological impact and clinical relevance. FUDMA J. Sci., 8(6): 217-233. DOI: https://doi.org/10.33003/fjs-2024-0806-3094
Nowicki, S., de Laurent, Z. R., de Villiers, E. P., Githinji, G. and Charles, K. J. (2021). The utility of Escherichia coli as a contamination indicator for rural drinking water: evidence from whole genome sequencing. PLoS One, 16: e0245910. Doi: 10.1371/journal.pone.0245910 DOI: https://doi.org/10.1371/journal.pone.0245910
Pelić, D. L., Radosavljević, V., Pelić, M., Baloš, M. Ž., Puvača, N., Jug-Dujaković, J. and Gavrilović, A. (2024). Antibiotic residues in cultured fish: implications for food safety and regulatory concerns. Fish., 9(12): 484. https://doi.org/10.3390/fishes9120484 DOI: https://doi.org/10.3390/fishes9120484
Saba, A. O., Eyo, V. O., Elegbede, I. O., Fakoya, K. A., Ojewole, A. E., Dawodu, F. O., Adewale, R. A. and Amal, M. N. A. (2024). Sustaining the blue bounty: fish food and nutrition security in Nigeria’s evolving blue economy. AIMS Agri. Foo., 9(2): 500-530. DOI: 10.3934/agrfood.2024029 DOI: https://doi.org/10.3934/agrfood.2024029
Sarter, S., Nguyen, H. N. K., Hung, L. T., Lazard, J. and Montet, D. (2007). Antibiotic resistance in Gram-negative bacteria isolated from farmed catfish. Foo. Con., 18(11): 1391–1396. https://doi.org/10.1016/j.foodcont.2006.10.003 DOI: https://doi.org/10.1016/j.foodcont.2006.10.003
Schmidt, M. A., Blum, M., Donald, J. L., Meenan, R. T., Carrió, E., Poolman, J., Neary, M. P., Verstraeten, T. and Geurtsen, J. (2025). Economic and disease burden associated with invasive Escherichia coli disease in the United States. Infec. Dis. Therap., 14(3): 569-586. DOI: 10.1007/s40121-025-01112-7 DOI: https://doi.org/10.1007/s40121-025-01112-7
Titilawo, Y., Obi, L. and Okoh, A. (2015). Antimicrobial resistance determinants of Escherichia coli isolates recovered from some rivers in Osun State, South-Western Nigeria: implications for public health. Sci. Tot. Env., 523: 82-94. DOI: 10.1016/j.scitotenv.2015.03.095 DOI: https://doi.org/10.1016/j.scitotenv.2015.03.095
Yohans, H., Mitiku, B. A. and Tassew, H. (2022). Levels of Escherichia coli as bio-indicator of contamination of fish food and antibiotic resistance pattern along the value chain in Northwest Ethiopia. Vet. Med.: Res. Rep., 13: 299-311. DOI: 10.2147/VMRR.S373738 DOI: https://doi.org/10.2147/VMRR.S373738
Zhang, Z., Zhang, Q., Wang, T., Xu, N., Lu, T., Hong, W. and Qian, H. (2022). Assessment of global health risk of antibiotic resistance genes. Nature Com., 13 (1): 1553. DOI: 10.1038/s41467-022-29296-1 DOI: https://doi.org/10.1038/s41467-022-29283-8
